Structure information

CB1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

9B9Z

SPECIES

Homo sapiens

RESOLUTION

3.300

PREFERRED CHAIN

R

REFERENCE

PUBLICATION DATE

Nov. 20, 2024

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
MRI-1867 F102 N-term hydrophobic
MRI-1867 M103 N-term polar (hydrogen bond)
MRI-1867 D104 N-term Van der Waals
MRI-1867 D104 N-term polar (hydrogen bond with backbone)
MRI-1867 I105 N-term Van der Waals
MRI-1867 S123 1.39x39 TM1 polar (hydrogen bond)
MRI-1867 G166 2.53x53 TM2 Van der Waals
MRI-1867 F170 2.57x57 TM2 Van der Waals
MRI-1867 F170 2.57x57 TM2 aromatic (edge-to-face)
MRI-1867 V196 3.32x32 TM3 Van der Waals
MRI-1867 V196 3.32x32 TM3 hydrophobic
MRI-1867 F268 ECL2 Van der Waals
MRI-1867 F268 ECL2 hydrophobic
MRI-1867 L359 6.51x51 TM6 hydrophobic
MRI-1867 L359 6.51x51 TM6 Van der Waals
MRI-1867 F379 7.35x34 TM7 Van der Waals
MRI-1867 A380 7.36x35 TM7 hydrophobic
MRI-1867 A380 7.36x35 TM7 Van der Waals
MRI-1867 S383 7.39x38 TM7 Van der Waals
MRI-1867 M384 7.40x39 TM7 Van der Waals
MRI-1867 M384 7.40x39 TM7 hydrophobic

Ligands

MRI-1867

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Residue Diagrams

L N E L V T F T G L T L S L V A I A L Q 1 G S L A V A D L L G S V I F V Y S F I D 2 L F L S G V S A T F S A T V G G L K F L 3 A V V A F C L M W T I A I V I A V L P L 4 Y A Y V I F L L L V S T V G I W F M L Y 5 V L I L V V L I I C W G P L L A I M V Y 6 I P N V T S N L L C L M S C F A F V T 7
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ICL1 R S L R C ICL1ECL1 F H R K D ECL1ICL2 P L A Y K R I V ICL2ECL2 W N C E K L Q S V C S D I F P H I ECL2ICL3 T Q K S I I I H T S E D G K V Q V T R ICL3ECL3 K M ECL3N-term M K S I L D G L A D T T F R T I T T D L L Y V G S N D I Q Y E D I K G D M A S K L G Y F P Q K F P L T S F R G S P F Q E K M T A G D N P Q L V P A D Q V N I T E F Y N K S L S S F K E N E E N I Q C G E N F M D I E C F M V L N-termC-term S C E G T A Q P L D N S M G D S D C L H K H A N N A A S V H R A A E S C I K S T V K I A K V T M S V S T D T S A E A L C-term N P S Q Q L A I A V L S L T L G T F T V L E N L L V L C V I L H S R P S Y H F I G S L A V A D L L G S V I F V Y S F I D F H V S R N V F L F K L G G V T A S F T A S V G S L F L T A I D R Y I S I H R T R P K A V V A F C L M W T I A I V I A V L P L L G D E T Y L M F W I G V T S V L L L F I V Y A Y M Y I L W K A H S H A V R M I Q R G P D Q A R M D I R L A K T L V L I L V V L I I C W G P L L A I M V Y D V F G N K L I K T V F A F C S M L C L L N S T V N P I I Y A L R S K D F R S L R H A M F P
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Residue Table


GPCRdb(A)
GPCRdb(A)
CB1 receptor
TM1
1x39 1.39x39 S123
TM2
2x53 2.53x53 G166
2x57 2.57x57 F170
TM3
3x32 3.32x32 V196
TM6
6x51 6.51x51 L359
TM7
7x34 7.35x34 F379
7x35 7.36x35 A380
7x38 7.39x38 S383
7x39 7.40x39 M384